Structure of doubly prenylated Ypt1:GDI complex DOI:10.2210/pdb2bcg/pdb

2BCG   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Protein Transport Structure Weight: 75892.13 Molecule: Secretory pathway GDP dissociation inhibitor Polymer: 1 Type: protein Length: 453 Chains: G Fragment: RabGDI Organism Saccharomyces cerevisiae Gene Names GDI1 SEC19 YER136W UniProtKB:   Protein Feature View | Search PDB | P39958     Molecule: GTP-binding protein YPT1 Polymer: 2 Type: protein Length: 206 Chains: Y Fragment: YPT1 Mutation: G204C Organism Saccharomyces cerevisiae Gene Names YPT1 YP2 YFL038C UniProtKB:   Protein Feature View | Search PDB | P01123         Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli bl21(de3)   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli bl21(de3)       Related PDB Entries Hide Identifier Details 1ukv  mono prenylated Ypt1:GDI complex      Ligand Chemical Component Hide Identifier Formula Name Interactions GDP Search  Download  C10 H15 N5 O11 P2 GUANOSINE-5'-DIPHOSPHATE   Ligand Explorer GER Search  Download  C20 H34 GERAN-8-YL GERAN   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer TRS Search  Download  C4 H12 N O3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 4 Domains - data from SCOP   CATH Classification v3.4.0: 4 Domains - data from CATH   Pfam Classification: 4 Domains - data from Pfam   GO Terms: 40 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Pylypenko, O.,  Rak, A.,  Alexandrov, K. Deposition:   2005-10-19 Release:   2006-01-17 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.48 R-Value: 0.165 (obs.) R-Free: 0.193 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 47.66 α = 90.00  b = 120.23 β = 90.67  c = 60.55 γ = 90.00