2AEI

Crystal structure of a ternary complex of factor VIIa/tissue factor and 2-[[6-[3-(aminoiminomethyl)phenoxy]-3,5-difluro-4-[(1-methyl-3-phenylpropyl)amino]-2-pyridinyl]oxy]-benzoic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 2AEI

Classification: HYDROLASE

Total Structure Weight: 70400.93

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor VII L 152 Homo sapiens EC#: 3.4.21.21 IUBMB
Fragment: LIGHT CHAIN
Mutation: E6X, E7X, E14X, E16X, E19X, E20X, E25X, E26X, E29X, E35X
Gene Name(s): F7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coagulation factor VII H 254 Homo sapiens EC#: 3.4.21.21 IUBMB
Fragment: HEAVY CHAIN
Gene Name(s): F7 Gene View
Tissue factor T 211 Homo sapiens Fragment: RESIDUES 33-243
Gene Name(s): F3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
03R
Query on 03R

H 2-({6-{3-[AMINO(IMINO)METHYL]PHENOXY}-3,5- DIFLUORO-4-[(1-METHYL-3-PHENYLPROPYL)AMINO]- 2-PYRIDINYL}OXY)BENZOIC ACID
C29 H26 F2 N4 O4
BUZNVJZUYOBGFM-KRWDZBQOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CAC
Query on CAC

H CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

H, L CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
03R N/A in BindingDB
N/A in BindingMoad
IC50: 86 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CGU
Query on CGU
L L-PEPTIDE LINKING C6 H9 N O6 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.21 α = 90.00
b = 80.50 β = 90.00
c = 125.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-22
  • Released Date: 2006-08-01
  • Deposition author(s): Adler, M., Whitlow, M.

Revision History

  • Version 1_0: 2006-08-01

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance