Snapshot of the reaction from 6-CN-UMP to BMP catalyzed by Orotidine Monophosphate Deacarboxylase from M. thermoautotrophicum DOI:10.2210/pdb2zz1/pdb

2ZZ1   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Lyase Structure Weight: 56506.33 Molecule: Orotidine 5'-phosphate decarboxylase Polymer: 1 Type: protein Length: 252 Chains: A, B EC#: 4.1.1.23    Mutation: R226L,I227N Organism Methanothermobacter thermautotrophicus Gene Names pyrF MTH_129 UniProtKB:   Protein Feature View | Search PDB | O26232         Source Hide Polymer: 1 Scientific Name: Methanothermobacter thermautotrophicus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1DV7  The same enzyme from the same source  1LOR  The same enzyme from the same source  1LOS  The same enzyme from the same source  1LP6  The same enzyme from the same source  1X1Z  The same enzyme from the same source  2E6Y  The same enzyme from the same source  2ZZ2    2ZZ3    2ZZ4    2ZZ5    2ZZ6    2ZZ7        Ligand Chemical Component Hide Identifier Formula Name Interactions 6CN Search  Download  C10 H12 N3 O9 P 6-cyanouridine 5'-phosphate   Ligand Explorer BMP Search  Download  C9 H13 N2 O10 P 6-HYDROXYURIDINE-5'-PHOSPHATE   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) 6CN Search  Download  Ki: 29000 nM (98) - data from BindingDB   N/A in BindingMoad Ki: 29000 nM - data from PDBbind       External Domain Annotations Hide CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 5 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Fujihashi, M.,  Pai, E.F. Deposition:   2009-02-05 Release:   2009-03-24 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Refinement description 2011-07-13 Version format compliance 2011-07-13 Flag residual B-value     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.57 R-Value: 0.157 (obs.) R-Free: 0.182 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 58.02 α = 90.00  b = 73.54 β = 119.29  c = 59.33 γ = 90.00