2Z2N

Crystal Structure of selenomethionine substituted virginiamycin B lyase from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 2Z2N

Classification: LYASE

Total Structure Weight: 33399.11

Macromolecule Entities
Molecule Chains Length Organism Details
virginiamycin B lyase A 299 Staphylococcus aureus EC#: 4.2.99 IUBMB
Mutation: P211T, L212S
Gene Name(s): vgb vgh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.156
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.97 α = 90.00
b = 34.75 β = 117.86
c = 86.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-25
  • Released Date: 2007-06-19
  • Deposition author(s): Korczynska, M., Berghuis, A.M.

Revision History

  • Version 1_0: 2007-06-19

    Type: Initial release

  • Version 1_1: 2007-11-20

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance