Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5
Niwa, H., Kuramitsu, S., Yokoyama, S.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
GDP-D-mannose dehydratase | 345 | Aquifex aeolicus VF5 | Mutation(s): 0  Gene Names: rfbD EC: 4.2.1.47 | ||
UniProt | |||||
Find proteins for O67175 (Aquifex aeolicus (strain VF5)) Explore O67175  Go to UniProtKB:  O67175 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O67175 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NDP Query on NDP | E [auth A], G [auth D] | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H30 N7 O17 P3 ACFIXJIJDZMPPO-NNYOXOHSSA-N | |||
GDP Query on GDP | F [auth A], H [auth D] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 58.799 | α = 90 |
b = 151.164 | β = 108.6 |
c = 85.934 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
CNS | phasing |