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Ligand binding domain of human PPAR gamma in complex with amorfrutin 1
2YFE
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Receptor
    Structure Weight: 66069.04
    Molecule: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
    Polymer: 1 Type: protein Length: 287
    Chains: A, B
    Fragment: LIGAND BINDING DOMAIN, RESIDUES 195-477
    Organism Homo sapiens
    Gene Names PPARG NR1C3
    UniProtKB:   Protein Feature View | Search PDB | P37231  
     
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    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
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    Identifier Details
    1FM6  THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THEHETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGANDBINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACIDAND ROSIGLITAZONE AND CO-ACTIVATOR PEPTIDES. 
    1FM9  THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THEHETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGANDBINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACIDAND GI262570 AND CO-ACTIVATOR PEPTIDES. 
    1I7I  CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMANPPAR-GAMMA IN COMPLEX WITH THE AGONIST AZ 242 
    1K74  THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THEHETERODIMER OF THE HUMAN PPARGAMMA AND RXRALPHA LIGANDBINDING DOMAINS RESPECTIVELY BOUND WITH GW409544 AND 9-CISRETINOIC ACID AND CO-ACTIVATOR PEPTIDES. 
    1KNU  LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATORACTIVATED RECEPTOR GAMMA IN COMPLEX WITH A SYNTHETICAGONIST 
    1NYX  LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATORACTIVATED RECEPTOR GAMMA IN COMPLEX WITH AN AGONIST 
    1PRG  LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA 
    1RDT  CRYSTAL STRUCTURE OF A NEW REXINOID BOUND TO THE RXRALPHALIGAND BINDING DOAMIN IN THE RXRALPHA/PPARGAMMA HETERODIMER 
    1WM0  PPARGAMMA IN COMPLEX WITH A 2-BABA COMPOUND 
    1ZGY  STRUCTURAL AND BIOCHEMICAL BASIS FOR SELECTIVE REPRESSIONOF THE ORPHAN NUCLEAR RECEPTOR LRH-1 BY SHP 
    2F4B  CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMANPPAR-GAMMA IN COMPLEX WITH AN AGONIST 
    2FVJ  A NOVEL ANTI-ADIPOGENIC PARTIAL AGONIST OF PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR-GAMMA (PPARG) RECRUITSPPARG-COACTIVATOR-1 ALPHA (PGC1A) BUT POTENTIATES INSULINSIGNALING IN VITRO 
    2G0G  STRUCTURE-BASED DRUG DESIGN OF A NOVEL FAMILY OF PPARPARTIAL AGONISTS: VIRTUAL SCREENING, X-RAY CRYSTALLOGRAPHY AND IN VITRO/IN VIVO BIOLOGICAL ACTIVITIES 
    2G0H  STRUCTURE-BASED DRUG DESIGN OF A NOVEL FAMILY OF PPARPARTIAL AGONISTS: VIRTUAL SCREENING, X-RAY CRYSTALLOGRAPHYAND IN VITRO/IN VIVO BIOLOGICAL ACTIVITIES 
    2PRG  LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA 
    2VSR  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 9-(S) -HODE 
    2VST  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 13-(S) -HODE 
    2VV0  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DHA 
    2VV1  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-HDHA 
    2VV2  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 5-HEPA 
    2VV3  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-OXODHA 
    2VV4  HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 6-OXOOTE 
    2XKW  LIGAND BINDING DOMAIN OF HUMAN PPAR-GAMMA IN COMPLEX WITH THE AGONIST PIOGLITAZONE 
    3PRG  LIGAND BINDING DOMAIN OF HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR 
    4PRG  0072 PARTIAL AGONIST PPAR GAMMA COCRYSTAL 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    YFE
    Search 
    Download      		YFE C21 H24 O4
    Amorfrutin 1
    		YFE:2YFE
     
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Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   De Groot, J.C.,  Buessow, K.

    Deposition:   2011-04-05
    Release:   2012-04-11
    Last Modified (REVDAT):   2012-05-23
     
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    2012-05-23
    Other
    2012-05-02
    Other
    2012-04-25
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.207 (obs.)
    R-Free: 0.254
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 92.81 α = 90.00 
    b = 61.10 β = 102.78 
    c = 118.22 γ = 90.00