2Y58

FRAGMENT GROWING INDUCES CONFORMATIONAL CHANGES IN ACETYLCHOLINE-BINDING PROTEIN: A STRUCTURAL AND THERMODYNAMIC ANALYSIS - (COMPOUND 6)

Structural Biology Knowledgebase: 2Y58 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y58

Classification: RECEPTOR

Total Structure Weight: 125873.35

Macromolecule Entities
Molecule Chains Length Organism Details
SOLUBLE ACETYLCHOLINE RECEPTOR A, B, C, D, E 217 Aplysia californica Fragment: RESIDUES 20-236
Mutation: A41V, A136V
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
V38
Query on V38

A, B, C, D, E [(1R,5S)-8-[(2R)-2-HYDROXY-2-PHENYL-ETHYL]- 8-METHYL-8-AZONIABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE
C23 H28 N O3
UOBMQJGLFUHOEX-KVZQYWQLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D, E CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
V38 N/A in BindingDB
N/A in BindingMoad
Kd: 3160 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.169
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 213.33 α = 90.00
b = 213.33 β = 90.00
c = 213.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-12
  • Released Date: 2011-06-15
  • Deposition author(s): Rucktooa, P., Edink, E., Deesch, I.J.P., Sixma, T.K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4