2Y33

S-NITROSYLATED PHD2 (GSNO SOAKED) IN COMPLEX WITH ZN(II) AND UN9

Structural Biology Knowledgebase: 2Y33 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y33

Classification: OXIDOREDUCTASE

Total Structure Weight: 28472.17

Macromolecule Entities
Molecule Chains Length Organism Details
EGL NINE HOMOLOG 1 A 252 Homo sapiens EC#: 1.14.11.29 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 181-426
Gene Name(s): EGLN1 Gene View C1orf12 PNAS-118 PNAS-137
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UN9
Query on UN9

A N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE
C12 H9 Cl N2 O4
OUQVKRKGTAUJQA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UN9 IC50: 70 - 3900 nM (100) BindingDB
Kd: 80 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SNC
Query on SNC
A L-PEPTIDE LINKING C3 H6 N2 O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.209
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.05 α = 90.00
b = 111.05 β = 90.00
c = 40.33 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-18
  • Released Date: 2010-12-29
  • Deposition author(s): Chowdhury, R., Clifton, I.J., Schofield, C.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4