2XQY

CRYSTAL STRUCTURE OF PSEUDORABIES CORE FRAGMENT OF GLYCOPROTEIN H IN COMPLEX WITH FAB D6.3

Structural Biology Knowledgebase: 2XQY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XQY

Classification: IMMUNE SYSTEM / VIRAL PROTEIN

Total Structure Weight: 227881.03

Macromolecule Entities
Molecule Chains Length Organism Details
ENVELOPE GLYCOPROTEIN H A, E 572 Suid herpesvirus 1 Fragment: RESIDUES 107-639
Gene Name(s): gH
A13-D6.3 MONOCLONAL ANTIBODY G, J 261 Mus musculus Fragment: HEAVY CHAIN OF FAB FRAGMENT
A13-D6.3 MONOCLONAL ANTIBODY K, L 220 Mus musculus Fragment: LIGHT CHAIN OF FAB FRAGMENT

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, E, G, J N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.188
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.31 α = 90.00
b = 100.63 β = 94.02
c = 161.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-08
  • Released Date: 2010-12-22
  • Deposition author(s): Backovic, M., Dubois, R., Cockburn, J., Sharff, A., Vaney, M., Granzow, H., Klupp, B., Bricogne, G., Mettenleiter, T., Rey, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4