RCSB Protein Data Bank - RCSB PDB - 2XQY Structure Summary

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CRYSTAL STRUCTURE OF PSEUDORABIES CORE FRAGMENT OF GLYCOPROTEIN H IN COMPLEX WITH FAB D6.3

DOI:10.2210/pdb2xqy/pdb

2XQY

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Immune System/viral Protein
Structure Weight:	227881.03

Molecule:

ENVELOPE GLYCOPROTEIN H

Polymer:

Type:

protein

Length:

572

Chains:

A, E

Fragment:

RESIDUES 107-639

Organism

Suid herpesvirus 1

Gene Name

UniProtKB:

| | P27416

Molecule:

A13-D6.3 MONOCLONAL ANTIBODY

Polymer:

Type:

protein

Length:

261

Chains:

G, J

Fragment:

HEAVY CHAIN OF FAB FRAGMENT

Organism

Mus musculus

Molecule:

A13-D6.3 MONOCLONAL ANTIBODY

Polymer:

Type:

protein

Length:

220

Chains:

K, L

Fragment:

LIGHT CHAIN OF FAB FRAGMENT

Organism

Mus musculus

Source

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Polymer: 1

Scientific Name:

Suid herpesvirus

Taxonomy

Common Name:

Pseudorabies virus

Expression System:

Drosophila melanogaster

Polymer: 2

Scientific Name:

Mus musculus

Taxonomy

Common Name:

House mouse

Expression System:

Drosophila melanogaster

Polymer: 3

Scientific Name:

Mus musculus

Taxonomy

Common Name:

House mouse

Expression System:

Drosophila melanogaster

Polymer: 4

Scientific Name:

Synthetic construct

Taxonomy

Ligand Chemical Component

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Identifier		Formula	Name	Interactions
NAG Search Download		C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer

External Domain Annotations Hide
Pfam Classification: 9 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 generated by PISA (software)

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Deposition Summary

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Authors: Backovic, M., Dubois, R., Cockburn, J., Sharff, A., Vaney, M., Granzow, H., Klupp, B., Bricogne, G., Mettenleiter, T., Rey, F.

Deposition:	2010-09-08
Release:	2010-12-22
Last Modified (REVDAT):	2011-04-06

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2011-07-13
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Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 82.31	α = 90.00
	b = 100.63	β = 94.02
	c = 161.83	γ = 90.00

Molecule of the Month Hide
Epidermal Growth Factor

Nanobodies

Antibodies

Hemagglutinin