2XK5

Crystal structure of K6-linked diubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 2XK5

Classification: PROTEIN BINDING

Total Structure Weight: 17624.57

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUITIN A 76 Homo sapiens Gene Name(s): RPS27A Gene View UBA80 UBCEP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UBIQUITIN B 76 Homo sapiens Mutation: D39Q
Gene Name(s): RPS27A Gene View UBA80 UBCEP1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.213
  • Space Group: P 43 3 2

Unit Cell:

Length (Å) Angle (°)
a = 104.84 α = 90.00
b = 104.84 β = 90.00
c = 104.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-07
  • Released Date: 2010-08-25
  • Deposition author(s): Virdee, S., Chin, J.W., Komander, D.

Revision History

  • Version 1_0: 2010-08-25

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance