2XJ0

PROTEIN KINASE PIM-1 IN COMPLEX WITH FRAGMENT-4 FROM CRYSTALLOGRAPHIC FRAGMENT SCREEN

Structural Biology Knowledgebase: 2XJ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XJ0

Classification: TRANSFERASE

Total Structure Weight: 34474.42

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE PIM-1 A 301 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 14-313
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XJ0
Query on XJ0

A (E)-3-(2-AMINO-PYRIDINE-5YL)-ACRYLIC ACID
(2E)-3-(2-AMINOPYRIMIDIN-5-YL)PROP-2-ENOIC ACID (Synonym)
C7 H7 N3 O2
ZSTSKJFUYGWSPO-OWOJBTEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XJ0 N/A in BindingDB
N/A in BindingMoad
IC50: 1500000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.216
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.24 α = 90.00
b = 96.24 β = 90.00
c = 80.46 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-01
  • Released Date: 2011-02-23
  • Deposition author(s): Schulz, M.N., Fanghanel, J., Schafer, M., Badock, V., Briem, H., Boemer, U., Nguyen, D., Husemann, M., Hillig, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4