2XH5

STRUCTURE OF 4-(4-TERT-BUTYLBENZYL)-1-(7H-PYRROLO(2,3-D) PYRIMIDIN-4-YL)PIPERIDIN-4-AMINE BOUND TO PKB

Structural Biology Knowledgebase: 2XH5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XH5

Classification: TRANSFERASE

Total Structure Weight: 41348.54

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-BETA SERINE/THREONINE-PROTEIN KINASE A 342 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 146-467
Mutation: R467Q, T468E, H469M, P471E, Q472D, S474D, S476I, S478D, I479W
Details: PIFTIDE SEQUENCE (EEQEMFEDFDYIADW) REPLACES NATURAL PKB SEQUENCE AFTER RESIDUE 464C
Gene Name(s): AKT2 Gene View
GLYCOGEN SYNTHASE KINASE-3 BETA C 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: RESIDUES 3-12
Details: PEPTIDE DERIVED FROM THE KINASE GSK3-BETA
Gene Name(s): GSK3B Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
X37
Query on X37

A 4-(4-tert-butylbenzyl)-1-(7H-pyrrolo[2,3- d]pyrimidin-4-yl)piperidin-4-aminium
C22 H30 N5
SNNUMARRAFQOGY-UHFFFAOYSA-O
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
X37 N/A in BindingDB
N/A in BindingMoad
IC50: 27 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.211
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.95 α = 90.00
b = 61.23 β = 90.00
c = 135.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-06-09
  • Released Date: 2010-06-16
  • Deposition author(s): Davies, T.G., Mchardy, T., Caldwell, J.J., Cheung, K.M., Hunter, L.J., Taylor, K., Rowlands, M., Ruddle, R., Henley, A., Brandon, A.D., Valenti, M., Fazal, L., Seavers, L., Raynaud, F.I., Eccles, S.A., Aherne, G.W., Garrett, M.D., Collins, I.
  • Previous versions: 2X37

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4