2XDX

STRUCTRE OF HSP90 WITH SMALL MOLECULE INHIBITOR BOUND

Structural Biology Knowledgebase: 2XDX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XDX

Classification: CHAPERONE

Total Structure Weight: 28195.21

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK PROTEIN HSP 90-ALPHA A 249 Homo sapiens Fragment: RESIDUES 9-236
Gene Name(s): HSP90AA1 Gene View HSP90A HSPC1 HSPCA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
WOE
Query on WOE

A 4-CHLORO-6-(2-METHOXYPHENYL)PYRIMIDIN-2-AMINE
C11 H10 Cl N3 O
SYQGHXNIIBJJKO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
WOE Ki: 1200 nM (100) BindingDB

Kd: 350 nM  BindingMOAD
Kd: 350 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.203
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.44 α = 90.00
b = 43.93 β = 114.38
c = 53.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-10
  • Released Date: 2010-09-01
  • Deposition author(s): Murray, C.W., Carr, M.G., Callaghan, O., Chessari, G., Congreve, M., Cowan, S., Coyle, J.E., Downham, R., Figueroa, E., Frederickson, M., Graham, B., Mcmenamin, R., Obrien, M.A., Patel, S., Phillips, T.R., Williams, G., Woodhead, A.J., Woolford, A.J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4