2XCL

Nucleotide-bound Structures of Bacillus subtilis Glycinamide Ribonucleotide Synthetase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 2XCL

Classification: LIGASE

Total Structure Weight: 46352.88

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE A 422 Bacillus subtilis EC#: 6.3.4.13 IUBMB
Gene Name(s): purD BSU06530
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.201
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.89 α = 90.00
b = 84.65 β = 90.00
c = 85.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-23
  • Released Date: 2011-03-23
  • Deposition author(s): Bertrand, J.A., Chen, S., Zalkin, H., Smith, J.L.

Revision History

  • Version 1_0: 2011-03-23

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance