CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR
2XCK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 36610.09
    Molecule: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1
    Polymer: 1 Type: protein Length: 309
    Chains: A
    EC#: 2.7.11.1   
    Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 1-309
    Organism: Homo sapiens
    Gene Names: Gene View for PDPK1 Gene View for PDK1
    UniProtKB: Protein Feature View | Search PDB | O15530  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
     
  •   Related PDB Entries Hide
    Identifier Details
    1H1W   HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN 
    1OKY   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE 
    1OKZ   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01 
    1UU3   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531 
    1UU7   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2 
    1UU8   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1 
    1UU9   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3 
    1UVR   STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8 
    1W1D   CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE 
    1W1G   CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4- PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE 
    1W1H   CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN 
    1Z5M   CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[ 3-[(1-PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO ]-4-PYRIMIDINYL]AMINO]PROPYL]-2,2- DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1 
    2BIY   STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN 
    2VKI   STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT 
    2XCH   CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    MH4
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    MH4 C29 H33 N9 O
    1-METHYL-8-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}- N-[(2-METHYLPYRIDIN-4-YL)METHYL]-4,5-DIHYDRO- 1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE
    MH4:2XCK
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    MH4
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    MH4
    N/Ain BindingDB
    IC50: 713 nM - data from BindingMOAD  
    IC50: 713 nM - data from PDBbind  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    SEP
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    SEP C3 H8 N O6 P SER lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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