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CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR
2XCH
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 36960.30
    Molecule: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1
    Polymer: 1 Type: protein Length: 309
    Chains: A
    EC#: 2.7.11.1   
    Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 1-309
    Organism: Homo sapiens
    Gene Names: Gene View for PDPK1 Gene View for PDK1
    UniProtKB: Protein Feature View | Search PDB | O15530  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
     
  •   Related PDB Entries Hide
    Identifier Details
    1H1W  HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN 
    1OKY  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE 
    1OKZ  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01 
    1UU3  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531 
    1UU7  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2 
    1UU8  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1 
    1UU9  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3 
    1UVR  STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8 
    1W1D  CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE 
    1W1G  CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4- PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE 
    1W1H  CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN 
    1Z5M  CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[ 3-[(1-PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO ]-4-PYRIMIDINYL]AMINO]PROPYL]-2,2- DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1 
    2BIY  STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN 
    2VKI  STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT 
    2XCK  CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CKG
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    CKG C22 H25 N7 O
    8-(CYCLOHEXA-2,5-DIEN-1-YLIDENEAMINO)-1-(PIPERIDIN- 4-YLMETHYL)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE- 3-CARBOXAMIDE
    CKG:2XCH
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    CKG
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    CKG
    N/Ain BindingDB
    IC50: 374 nM - data from BindingMOAD  
    IC50: 374 nM - data from PDBbind  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    SEP
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    SEP C3 H8 N O6 P SER lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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