2X9E

HUMAN MPS1 IN COMPLEX WITH NMS-P715

Structural Biology Knowledgebase: 2X9E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2X9E

Classification: TRANSFERASE

Total Structure Weight: 36916.64

Macromolecule Entities
Molecule Chains Length Organism Details
DUAL SPECIFICITY PROTEIN KINASE TTK A 317 Homo sapiens EC#: 2.7.12.1 IUBMB
Fragment: KINASE DOMAIN 514-828
Gene Name(s): TTK Gene View MPS1 MPS1L1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SVE
Query on SVE

A N-(2,6-DIETHYLPHENYL)-1-METHYL-8-({4-[(1- METHYLPIPERIDIN-4-YL)CARBAMOYL]-2-(TRIFLUOROMETHOXY)PHENYL}AMINO)- 4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE- 3-CARBOXAMIDE
C35 H39 F3 N8 O3
JFOAJUGFHDCBJJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SVE IC50: 7 - 182 nM (100) BindingDB

N/A in BindingMoad
IC50: 182 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.215
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.67 α = 90.00
b = 113.36 β = 90.00
c = 72.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-17
  • Released Date: 2010-12-29
  • Deposition author(s): Colombo, R., Caldarelli, M., Mennecozzi, M., Giorgini, M.L., Sola, F., Cappella, P., Perrera, C., Depaolini, S.R., Rusconi, L., Cucchi, U., Avanzi, N., Bertrand, J.A., Bossi, R.T., Pesenti, E., Galvani, A., Isacchi, A., Colotta, F., Donati, D., Moll, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4