CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME DOI:10.2210/pdb2ww9/pdb   NDB ID: 2WW9 EMDataBank  :1651, 1652, 1667, 1668, 1669

2WW9   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 261778.37 Molecule: SEC SIXTY-ONE PROTEIN HOMOLOG Polymer: 1 Type: protein Length: 490 Chains: A Organism Saccharomyces cerevisiae Gene Names SSH1 YBR283C YBR2020 UniProtKB:   Protein Feature View | Search PDB | P38353     Molecule: PROTEIN TRANSPORT PROTEIN SSS1 Polymer: 2 Type: protein Length: 80 Chains: B Organism Saccharomyces cerevisiae Gene Names SSS1 YDR086C D4475 UniProtKB:   Protein Feature View | Search PDB | P35179     Molecule: PROTEIN TRANSPORT PROTEIN SEB2 Polymer: 3 Type: protein Length: 87 Chains: C Fragment: RESIDUES 1-87 Organism Saccharomyces cerevisiae Gene Names SBH2 SEB2 YER019C-A YER019BC UniProtKB:   Protein Feature View | Search PDB | P52871     Molecule: 25S RRNA Polymer: 4 Type: rna Length: 63 Chains: D Details: H5_H6_H7 FRAGMENT Organism Saccharomyces cerevisiae Molecule: 25S RRNA Polymer: 5 Type: rna Length: 34 Chains: E Details: H24 FRAGMENT Organism Saccharomyces cerevisiae Molecule: 25S RRNA Polymer: 6 Type: rna Length: 25 Chains: F Details: H50 FRAGMENT Organism Saccharomyces cerevisiae Molecule: 25S RRNA Polymer: 7 Type: rna Length: 18 Chains: G Details: H59 FRAGMENT Organism Saccharomyces cerevisiae Molecule: 60S RIBOSOMAL PROTEIN L4-B Polymer: 8 Type: protein Length: 362 Chains: H Organism Saccharomyces cerevisiae Gene Names RPL4B RPL2B YDR012W YD8119.17 UniProtKB:   Protein Feature View | Search PDB | P49626     Molecule: 60S RIBOSOMAL PROTEIN L17-A Polymer: 9 Type: protein Length: 184 Chains: I Organism Saccharomyces cerevisiae Gene Names RPL17A RPL17 RPL20A YKL180W UniProtKB:   Protein Feature View | Search PDB | P05740     Molecule: 60S RIBOSOMAL PROTEIN L19 Polymer: 10 Type: protein Length: 189 Chains: J Organism Saccharomyces cerevisiae Gene Names RPL19A RPL23A YL14A YBR084C-A YBR084BC UniProtKB:   Protein Feature View | Search PDB | P0CX82     Molecule: 60S RIBOSOMAL PROTEIN L25 Polymer: 11 Type: protein Length: 142 Chains: K Organism Saccharomyces cerevisiae Gene Names RPL25 YOL127W UniProtKB:   Protein Feature View | Search PDB | P04456     Molecule: 60S RIBOSOMAL PROTEIN L26-A Polymer: 12 Type: protein Length: 127 Chains: L Organism Saccharomyces cerevisiae Gene Names RPL26A RPL26 RPL33A YLR344W L8300.4 UniProtKB:   Protein Feature View | Search PDB | P05743     Molecule: 60S RIBOSOMAL PROTEIN L31-A Polymer: 13 Type: protein Length: 113 Chains: M Organism Saccharomyces cerevisiae Gene Names RPL31A RPL34 RPL34A YDL075W D2478 UniProtKB:   Protein Feature View | Search PDB | P0C2H8     Molecule: 60S RIBOSOMAL PROTEIN L35 Polymer: 14 Type: protein Length: 120 Chains: N Organism Saccharomyces cerevisiae Gene Names RPL35A SOS1 YDL191W D1249 UniProtKB:   Protein Feature View | Search PDB | P0CX84     Molecule: 60S RIBOSOMAL PROTEIN L39 Polymer: 15 Type: protein Length: 51 Chains: O Organism Saccharomyces cerevisiae Gene Names RPL39 RPL46 SPB2 YJL189W J0360 UniProtKB:   Protein Feature View | Search PDB | P04650         Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 14 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 15 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast       Related PDB Entries Hide Identifier Details 1K5Y  STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEINCOMPONENTS INTO A 15A CRYO-EM MAP. THIS FILE 1K5Y CONTAINSTHE 60S RIBOSOMAL SUBUNIT. THE FILE 1K5X CONTAINS THE 40SRIBOSOMAL SUBUNIT, THE P-SITE BOUND TRNA AND THE MRNACODON.  1S1I  STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROMYEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA ANDPROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE,1S1I, CONTAINS 60S SUBUNIT. THE 40S RIBOSOMAL SUBUNIT ISIN FILE 1S1H.  2WWA  CRYO-EM STRUCTURES OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME  2WWB  CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME      External Domain Annotations Hide Pfam Classification: 12 Domains - data from Pfam   GO Terms: 109 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: 2WW9   Electron Microscopy Database Hide EMDataBank  :  1651  1652  1667  1668  1669     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Becker, T.,  Mandon, E.,  Bhushan, S.,  Jarasch, A.,  Armache, J.P.,  Funes, S.,  Jossinet, F.,  Gumbart, J.,  Mielke, T.,  Berninghausen, O.,  Schulten, K.,  Westhof, E.,  Gilmore, R.,  Beckmann, R. Deposition:   2009-10-22 Release:   2009-12-08 Last Modified (REVDAT):   2011-07-20     Revision History    Hide Mouse over text for details 2011-07-20 Biological assembly 2011-07-20 Citation 2011-07-20 Entry authorship 2011-07-20 Function and keywords 2011-07-20 Refinement description 2011-07-20 Entry title 2011-07-20 Other 2011-07-20 Polymer description     Experimental Details Hide Method:   ELECTRON MICROSCOPY Exp. Data: EM Resolution [Å]: 8.6 Aggregation State: PARTICLE Symmetry Type: MIXED SYMMETRY Reconstruction Method: SINGLE PARTICLE Specimen Type: VITREOUS ICE (CRYO EM)     Molecule of the Month Hide Ribosomal Subunits Ribosome Ricin