2WO6

Human Dual-Specificity Tyrosine-Phosphorylation-Regulated Kinase 1A in complex with a consensus substrate peptide

Structural Biology Knowledgebase: 2WO6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WO6

Classification: TRANSFERASE / PEPTIDE

Total Structure Weight: 90821.45

Macromolecule Entities
Molecule Chains Length Organism Details
DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION- REGULATED KINASE 1A A, B 382 Homo sapiens EC#: 2.7.12.1 IUBMB
Fragment: RESIDUES 127-485
Gene Name(s): DYRK1A Gene View DYRK MNB MNBH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ARTIFICIAL CONSENSUS SEQUENCE C 8 Homo sapiens Gene Name(s): CRB2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D15
Query on D15

A, B N-(5-{[(2S)-4-amino-2-(3-chlorophenyl)butanoyl]amino}- 1H-indazol-3-yl)benzamide
C24 H22 Cl N5 O2
JDGOPNUGILVNJZ-IBGZPJMESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A, B L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.188
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 168.43 α = 90.00
b = 168.43 β = 90.00
c = 62.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-22
  • Released Date: 2009-08-18
  • Deposition author(s): Roos, A.K., Soundararajan, M., Elkins, J.M., Fedorov, O., Eswaran, J., Phillips, C., Pike, A.C.W., Ugochukwu, E., Muniz, J.R.C., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Wikstrom, M., Edwards, A., Bountra, C., Knapp, S.

Revision History

  • 2013-12-04
    Type: Source and taxonomy | Details: SOURCE
  • 2013-06-26
    Type: Citation | Details: JRNL
  • 2013-06-26
    Type: Other | Details: REMARK 280
  • 2013-06-26
    Type: Biological assembly | Details: REMARK 350
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor