2WHH

HIV-1 PROTEASE TETHERED DIMER Q-PRODUCT COMPLEX ALONG WITH NUCLEOPHILIC WATER MOLECULE

Structural Biology Knowledgebase: 2WHH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 2WHH

Classification: HYDROLASE

Total Structure Weight: 22617.55

Macromolecule Entities
Molecule Chains Length Organism Details
POL PROTEIN A 203 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: RESIDUES 7-105
Mutation: I3V, V62I, C95M, I1003V, V1062I, C1095A
Details: 5 RESIDUE PEPTIDE LINK BETWEEN C TERMINUS OF FIRST SUB-UNIT AND THE N TERMINUS OF THE SECOND SUB-UNIT OF THE DIMER TO PRODUCE A TETHERED DIMER OF HIV-1 PROTEASE (ALSO SEE REMARK 999)
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PPN
Query on PPN

A PARA-NITROPHENYLALANINE
C9 H10 N2 O4
GTVVZTAFGPQSPC-QMMMGPOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLU
Query on GLU

A GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.219
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.54 α = 90.00
b = 62.54 β = 90.00
c = 81.99 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-05
  • Released Date: 2009-12-01
  • Deposition author(s): Prashar, V., Bihani, S., Das, A., Ferrer, J.L., Hosur, M.V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4