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CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE IN COMPLEX WITH THIENOPYRROLE-BASED FINGER-LOOP INHIBITORS
2WCX
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 60222.63
    Molecule: RNA-DIRECTED RNA POLYMERASE
    Polymer: 1 Type: protein Length: 537
    Chains: A
    EC#: 2.7.7.48   
    Fragment: NS5B, RESIDUES 2420-2955
    Organism Hepatitis C virus (isolate BK)
    UniProtKB:   Protein Feature View | Search PDB | P26663  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Hepatitis c virus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1A1Q  HEPATITIS C VIRUS NS3 PROTEINASE 
    1C2P  HEPATITIS C VIRUS NS5B RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID POLYMERASE 
    1CSJ  CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID POLYMERASE OF HEPATITIS C VIRUS 
    1CU1  CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS 
    1GX5  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND MANGANESE 
    1GX6  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH UTP AND MANGANESE 
    1JXP  BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A 
    1NHU  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE ANALOGUE INHIBITOR 
    1NHV  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE ANALOGUE INHIBITOR 
    1NS3  STRUCTURE OF HCV PROTEASE (BK STRAIN) 
    1OS5  CRYSTAL STRUCTURE OF HCV NS5B RNA POLYMERASE COMPLEXED WITHA NOVEL NON-COMPETITIVE INHIBITOR. 
    1QUV  CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID DIRECTED RIBONUCLEIC ACID POLYMERASE OF HEPATITIS C VIRUS 
    2AWZ  HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT INHIBITOR (5H) 
    2AX0  HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT INHIBITOR (5X) 
    2AX1  HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT INHIBITOR (5EE) 
    2BRK  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 1) 
    2BRL  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 2) 
    2I1R  NOVEL THIAZOLONES AS HCV NS5B POLYMERASE INHIBITORS:FURTHER DESIGNS, SYNTHESIS, SAR AND X-RAY COMPLEX STRUCTURE 
    2JC0  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB655264 
    2JC1  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB698223 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
    VGC
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    VGC C20 H21 N O2 S
    6-CYCLOHEXYL-4-METHYL-5-PHENYL-4H-THIENO[3,2- B]PYRROLE-2-CARBOXYLIC ACID
    VGC:2WCX
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    VGC
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    VGC
    N/Ain BindingDB
    IC50: 25 nM - data from BindingMOAD  
    IC50: 25 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Di Marco, S.

    Deposition:   2009-03-17
    Release:   2009-08-18
    Last Modified (REVDAT):   2011-11-23
     
  •   Revision History    Hide
    Mouse over text for details
    2011-11-23
    Citation
    2011-11-23
    Atom nomenclature
    2011-11-23
    Biological assembly
    2011-11-23
    Version format compliance
    2011-11-23
    Refinement description
    2011-11-23
    Other
    2011-11-23
    Non-polymer description
    2011-11-23
    Geometry validation
    2011-11-23
    Function and keywords
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.169 (obs.)
    R-Free: 0.209
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 68.41 α = 90.00 
    b = 94.71 β = 90.00 
    c = 95.54 γ = 90.00