2W98

CRYSTAL STRUCTURE OF HUMAN ZINC-BINDING ALCOHOL DEHYDROGENASE 1 (ZADH1) IN TERNARY COMPLEX WITH NADP AND PHENYLBUTAZONE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 2W98

Classification: OXIDOREDUCTASE

Total Structure Weight: 82976.23

Macromolecule Entities
Molecule Chains Length Organism Details
PROSTAGLANDIN REDUCTASE 2 A, B 357 Homo sapiens EC#: 1.3.1.48 IUBMB
Fragment: RESIDUES 1-349
Gene Name(s): PTGR2 Gene View ZADH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
P1Z
Query on P1Z

A, B 4-BUTYL-1,2-DIPHENYL-PYRAZOLIDINE-3,5-DIONE
C19 H20 N2 O2
VYMDGNCVAMGZFE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LMR
Query on LMR

B (2S)-2-hydroxybutanedioic acid
L-Malate (Synonym)
C4 H6 O5
BJEPYKJPYRNKOW-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.158
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 141.01 α = 90.00
b = 82.79 β = 99.77
c = 69.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-22
  • Released Date: 2009-04-07
  • Deposition author(s): Shafqat, N., Yue, W.W., Muniz, J., Picaud, S., Niesen, F., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

Revision History

  • Version 1_0: 2009-04-07

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2013-12-04

    Type: Non-polymer description, Source and taxonomy