2W4Q

Crystal structure of human zinc-binding alcohol dehydrogenase 1 (ZADH1) in ternary complex with NADP and 18beta-glycyrrhetinic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 2W4Q

Classification: OXIDOREDUCTASE

Total Structure Weight: 41400.73

Macromolecule Entities
Molecule Chains Length Organism Details
PROSTAGLANDIN REDUCTASE 2 A 357 Homo sapiens EC#: 1.3.1.48 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 1-349
Gene Name(s): PTGR2 Gene View ZADH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CBW
Query on CBW

A (3BETA,5BETA,14BETA)-3-HYDROXY-11-OXOOLEAN- 12-EN-29-OIC ACID
C30 H46 O4
MPDGHEJMBKOTSU-YKLVYJNSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.177
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 69.37 α = 90.00
b = 84.11 β = 109.05
c = 72.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-30
  • Released Date: 2009-01-20
  • Deposition author(s): Shafqat, N., Yue, W.W., Ugochukwu, E., Picaud, S., Niesen, F., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance
  • 2013-12-04
    Type: Non-polymer description, Refinement description, Source and taxonomy