POP-OUT | CLOSE
 
Does a Fast Nuclear Magnetic Resonance Spectroscopy- and X-Ray Crystallography Hybrid Approach Provide Reliable Structural Information of Ligand-Protein Complexes? A Case Study of Metalloproteinases.
2W0D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 76338.20
    Molecule: MACROPHAGE METALLOELASTASE
    Polymer: 1 Type: protein Length: 164
    Chains: A, B, C, D
    EC#: 3.4.24.65   
    Fragment: CATALYTIC DOMAIN, RESIDUES 106-263
    Mutation: YES
    Details: COMPOUND EXPRESSED WITH A 5XHIS TAG AT THE C-TERMINUS FOR CLONING/PURIFICATION PURPOSES
    Organism: Homo sapiens
    Gene Names: Gene View for MMP12 HME
    UniProtKB: Protein Feature View | Search PDB | P39900  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1JIZ  CRYSTAL STRUCTURE ANALYSIS OF HUMAN MACROPHAGE ELASTASE MMP-12 
    1JK3  CRYSTAL STRUCTURE OF HUMAN MMP-12 ( MACROPHAGE ELASTASE) ATTRUE ATOMIC RESOLUTION 
    1OS2  TERNARY ENZYME-PRODUCT-INHIBITOR COMPLEXES OF HUMAN MMP12 
    1OS9  BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12 
    1RMZ  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH THE INHIBITOR NNGH AT 1.3 A RESOLUTION 
    1ROS  CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID 
    1UTT  CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID 
    1UTZ  CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO ( 2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN- 2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID 
    1Y93  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH ACETOHYDROXAMIC ACID AT ATOMIC RESOLUTION 
    1YCM  SOLUTION STRUCTURE OF MATRIX METALLOPROTEINASE 12 (MMP12)IN THE PRESENCE OF N-ISOBUTYL- N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID (NNGH) 
    1Z3J  SOLUTION STRUCTURE OF MMP12 IN THE PRESENCE OF N-ISOBUTYL-N-4-METHOXYPHENYLSULFONYL] GLYCYL HYDROXAMIC ACID (NNGH) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ACT
    Search 
    Download 
    ACT C2 H3 O2
    ACETATE ION
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
    CGS
    Search 
    Download 
    CGS C18 H23 N3 O5 S
    N-HYDROXY-2(R)-[[(4-METHOXYPHENYL)SULFONYL](3- PICOLYL)AMINO]-3-METHYLBUTANAMIDE HYDROCHLORIDE
    CGS:2W0D
    CL
    Search 
    Download 
    CL Cl
    CHLORIDE ION
    NA
    Search 
    Download 
    NA Na
    SODIUM ION
    ZN
    Search 
    Download 
    ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    CGS
    Search 
    Download 
    CGS
    N/Ain BindingDB
    IC50: 2 nM - data from BindingMOAD  
    IC50: 2.0 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers: