2VSR

hPPARgamma Ligand binding domain in complex with 9-(S)-HODE

Structural Biology Knowledgebase: 2VSR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VSR

Classification: RECEPTOR

Total Structure Weight: 63788.95

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A, B 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Details: 9-(S)-HODE
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9HO
Query on 9HO

A, B (9S,10E,12Z)-9-hydroxyoctadeca-10,12-dienoic acid
C18 H32 O3
NPDSHTNEKLQQIJ-UINYOVNOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.226
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.18 α = 90.00
b = 61.67 β = 103.02
c = 118.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-29
  • Released Date: 2008-08-19
  • Deposition author(s): Itoh, T., Fairall, L., Schwabe, J.W.R.

Revision History

  • 2012-06-06
    Type: Refinement description | Details: REMARK 3
  • 2012-06-06
    Type: Source and taxonomy | Details: SOURCE
  • 2012-06-06
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-06-06
    Type: Geometry validation | Details: REMARK 500
  • 2012-06-06
    Type: Citation | Details: JRNL
  • 2012-06-06
    Type: Non-polymer description | Details: FORMUL,HETNAM
  • 2012-06-06
    Type: Other | Details: REMARK 525
  • 2012-06-06
    Type: Version format compliance | Details: REMARK 4