Macromolecules
Sequence Display for 2VRF

Classification: PROTEIN BINDING

Total Structure Weight: 41570.69

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-2-SYNTROPHIN A, B, C, D 95 Homo sapiens Fragment: PDZ DOMAIN, RESIDUES 112-200
Gene Name(s): SNTB2 Gene View D16S2531E SNT2B2 SNTL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.184
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 56.69 α = 90.00
b = 29.50 β = 95.78
c = 128.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-31
  • Released Date: 2008-04-22
  • Deposition author(s): Sun, Z., Roos, A.K., Pike, A.C.W., Pilka, E.S., Cooper, C., Elkins, J.M., Murray, J., Arrowsmith, C.H., Doyle, D., Edwards, A., von Delft, F., Bountra, C., Oppermann, U.

Revision History

  • Version 1_0: 2008-04-22

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2012-12-05

    Type: Database references, Derived calculations, Other, Structure summary