2VR8

CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD) AT 1.36 A RESOLUTION

Structural Biology Knowledgebase: 2VR8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VR8

Classification: OXIDOREDUCTASE

Total Structure Weight: 32883.53

Macromolecule Entities
Molecule Chains Length Organism Details
SUPEROXIDE DISMUTASE [CU-ZN] A, F 154 Homo sapiens EC#: 1.15.1.1 IUBMB
Fragment: RESIDUES 2-154
Mutation: G85R
Gene Name(s): SOD1 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, F COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A, F THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A, F NON-POLYMER C2 H4 O --
CSO
Query on CSO
A, F L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 34.21 α = 90.00
b = 56.65 β = 102.14
c = 74.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-28
  • Released Date: 2008-04-08
  • Deposition author(s): Antonyuk, S., Cao, X., Seetharaman, S.V., Whitson, L.J., Taylor, A.B., Holloway, S.P., Strange, R.W., Doucette, P.A., Tiwari, A., Hayward, L.J., Padua, S., Cohlberg, J.A., Selverstone Valentine, J., Hasnain, S.S., Hart, P.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4