2VLI

Structure of Deinococcus radiodurans tunicamycin resistance protein

Structural Biology Knowledgebase: 2VLI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VLI

Classification: TRANSFERASE

Total Structure Weight: 40989.26

Macromolecule Entities
Molecule Chains Length Organism Details
ANTIBIOTIC RESISTANCE PROTEIN A, B 183 Deinococcus radiodurans Gene Name(s): DR_1419
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.174
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.36 α = 90.00
b = 118.16 β = 90.00
c = 81.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-15
  • Released Date: 2008-06-17
  • Deposition author(s): Macedo, S., Kapp, U., Leiros, I., Hall, D.R., Mitchell, E.

Revision History

  • 2012-05-30
    Type: Citation | Details: JRNL
  • 2012-05-30
    Type: Data collection | Details: REMARK 200
  • 2012-05-30
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-05-30
    Type: Version format compliance | Details: REMARK 4
  • 2012-05-30
    Type: Function and keywords | Details: KEYWDS
  • 2012-05-30
    Type: Other | Details: REMARK 375,REMARK 525
  • 2012-05-30
    Type: Non-polymer description | Details: FORMUL
  • 2012-05-30
    Type: Geometry validation | Details: REMARK 500