2VL7

STRUCTURE OF S. TOKODAII XPD4

Structural Biology Knowledgebase: 2VL7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VL7

Classification: UNKNOWN FUNCTION

Total Structure Weight: 62422.07

Macromolecule Entities
Molecule Chains Length Organism Details
XPD A 540 Sulfolobus tokodaii Gene Name(s): xpd STK_13070

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.232
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.71 α = 90.00
b = 100.29 β = 90.00
c = 62.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-08
  • Released Date: 2008-05-13
  • Deposition author(s): Naismith, J.H., Johnson, K.A., Oke, M., Mcmahon, S.A., Liu, L., White, M.F., Zawadski, M., Carter, L.G.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4