HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R)-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2-OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL)PROPYL)-3-(PENTYLSULFONYL)BENZAMIDE DOI:10.2210/pdb2viy/pdb

2VIY   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 44333.57 Molecule: BETA-SECRETASE 1 Polymer: 1 Type: protein Length: 392 Chains: A EC#: 3.4.23.46    Fragment: RESIDUES 61-452 Mutation: YES Organism Homo sapiens Gene Names BACE1 BACE KIAA1149 UniProtKB:   Protein Feature View | Search PDB | P56817         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus       Related PDB Entries Hide Identifier Details 1FKN  STRUCTURE OF BETA-SECRETASE COMPLEXED WITH INHIBITOR  1M4H  CRYSTAL STRUCTURE OF BETA-SECRETASE COMPLEXED WITHINHIBITOR OM00-3  1PY1  COMPLEX OF GGA1-VHS DOMAIN AND BETA- SECRETASE C-TERMINALPHOSPHOPEPTIDE  1SGZ  CRYSTAL STRUCTURE OF UNBOUND BETA-SECRETASE CATALYTICDOMAIN.  1TQF  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-124,671  1UJJ  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINAL PEPTIDEFROM BACE  1UJK  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINALPHOSPHOPEPTIDE FROM BACE  1W50  APO STRUCTURE OF BACE (BETA SECRETASE)  1W51  BACE (BETA SECRETASE) IN COMPLEX WITH A NANOMOLAR NON-PEPTIDIC INHIBITOR  1XN2  NEW SUBSTRATE BINDING POCKETS FOR BETA- SECRETASE.  1XN3  CRYSTAL STRUCTURE OF BETA-SECRETASE BOUND TO A LONGINHIBITOR WITH ADDITIONAL UPSTREAM RESIDUES.  1XS7  CRYSTAL STRUCTURE OF A CYCLOAMIDE-URETHANE- DERIVED NOVELINHIBITOR BOUND TO HUMAN BRAIN MEMAPSIN 2 (BETA-SECRETASE).  1YM2  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AUR200  1YM4  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AMK640  2B8L  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-000384950  2B8V  CRYSTAL STRUCTURE OF HUMAN BETA-SECRETASE COMPLEXED WITH L-L000430,469  2VA5  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 8C  2VA6  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 24  2VA7  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 27  2VIE  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-1-BENZYL-2-HYDROXY-3-((1,1,5- TRIMETHYLHEXYL)AMINO)PROPYL)-3-(ETHYLAMINO)-5 -(2-OXOPYRROLIDIN-1-YL)BENZAMIDE  2VIJ  HUMAN BACE-1 IN COMPLEX WITH 3-(1,1- DIOXIDOTETRAHYDRO-2H-1,2-THIAZIN-2-YL)-5 -(ETHYLAMINO)-N-((1S,2R)-2-HYDROXY-1-( PHENYLMETHYL)-3-(1,2,3,4-TETRAHYDRO-1- NAPHTHALENYLAMINO)PROPYL)BENZAMIDE  2VIZ  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2- OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL) PROPYL)-3-(2-OXO-1-PYRROLIDINYL)-5-( PROPYLOXY)BENZAMIDE      Ligand Chemical Component Hide Identifier Formula Name Interactions VG3 Search  Download  C31 H45 N3 O5 S N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]- 3-(pentylsulfonyl)benzamide   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) VG3 Search  Download  IC50: 1800 nM (98) - data from BindingDB   IC50: 1800 nM - data from BindingMOAD   IC50: 1800 nM - data from PDBbind       External Domain Annotations Hide CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Clarke, B.,  Demont, E.,  Dingwall, C.,  Dunsdon, R.,  Faller, A.,  Hawkins, J.,  Hussain, I.,  Macpherson, D.,  Maile, G.,  Matico, R.,  Milner, P.,  Mosley, J.,  Naylor, A.,  O'Brien, A.,  Redshaw, S.,  Riddell, D.,  Rowland, P.,  Soleil, V.,  Smith, K.,  Stanway, S.,  Stemp, G.,  Sweitzer, S.,  Theobald, P.,  Vesey, D.,  Walter, D.S.,  Ward, J.,  Wayne, G. Deposition:   2007-12-06 Release:   2008-01-29 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.82 R-Value: 0.181 (work) R-Free: 0.216 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 48.80 α = 90.00  b = 76.86 β = 90.00  c = 104.01 γ = 90.00      Molecule of the Month Hide beta-Secretase Amyloid-beta Precursor Protein