POP-OUT | CLOSE
 
HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R)-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2-OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL)PROPYL)-3-(PENTYLSULFONYL)BENZAMIDE
2VIY
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 44333.57
    Molecule: BETA-SECRETASE 1
    Polymer: 1 Type: protein Length: 392
    Chains: A
    EC#: 3.4.23.46   
    Fragment: RESIDUES 61-452
    Mutation: YES
    Organism: Homo sapiens
    Gene Names: Gene View for BACE1 BACE KIAA1149
    UniProtKB: Protein Feature View | Search PDB | P56817  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus  
     
  •   Related PDB Entries Hide
    Identifier Details
    1FKN  STRUCTURE OF BETA-SECRETASE COMPLEXED WITH INHIBITOR 
    1M4H  CRYSTAL STRUCTURE OF BETA-SECRETASE COMPLEXED WITHINHIBITOR OM00-3 
    1PY1  COMPLEX OF GGA1-VHS DOMAIN AND BETA- SECRETASE C-TERMINALPHOSPHOPEPTIDE 
    1SGZ  CRYSTAL STRUCTURE OF UNBOUND BETA-SECRETASE CATALYTICDOMAIN. 
    1TQF  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-124,671 
    1UJJ  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINAL PEPTIDEFROM BACE 
    1UJK  VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C -TERMINALPHOSPHOPEPTIDE FROM BACE 
    1W50  APO STRUCTURE OF BACE (BETA SECRETASE) 
    1W51  BACE (BETA SECRETASE) IN COMPLEX WITH A NANOMOLAR NON-PEPTIDIC INHIBITOR 
    1XN2  NEW SUBSTRATE BINDING POCKETS FOR BETA- SECRETASE. 
    1XN3  CRYSTAL STRUCTURE OF BETA-SECRETASE BOUND TO A LONGINHIBITOR WITH ADDITIONAL UPSTREAM RESIDUES. 
    1XS7  CRYSTAL STRUCTURE OF A CYCLOAMIDE-URETHANE- DERIVED NOVELINHIBITOR BOUND TO HUMAN BRAIN MEMAPSIN 2 (BETA-SECRETASE). 
    1YM2  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AUR200 
    1YM4  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITHNVP-AMK640 
    2B8L  CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE COMPLEXED WITH L-000384950 
    2B8V  CRYSTAL STRUCTURE OF HUMAN BETA-SECRETASE COMPLEXED WITH L-L000430,469 
    2VA5  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 8C 
    2VA6  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 24 
    2VA7  X-RAY CRYSTAL STRUCTURE OF BETA SECRETASE COMPLEXED WITH COMPOUND 27 
    2VIE  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-1-BENZYL-2-HYDROXY-3-((1,1,5- TRIMETHYLHEXYL)AMINO)PROPYL)-3-(ETHYLAMINO)-5 -(2-OXOPYRROLIDIN-1-YL)BENZAMIDE 
    2VIJ  HUMAN BACE-1 IN COMPLEX WITH 3-(1,1- DIOXIDOTETRAHYDRO-2H-1,2-THIAZIN-2-YL)-5 -(ETHYLAMINO)-N-((1S,2R)-2-HYDROXY-1-( PHENYLMETHYL)-3-(1,2,3,4-TETRAHYDRO-1- NAPHTHALENYLAMINO)PROPYL)BENZAMIDE 
    2VIZ  HUMAN BACE-1 IN COMPLEX WITH N-((1S,2R )-3-(((1S)-2-(CYCLOHEXYLAMINO)-1-METHYL-2- OXOETHYL)AMINO)-2-HYDROXY-1-(PHENYLMETHYL) PROPYL)-3-(2-OXO-1-PYRROLIDINYL)-5-( PROPYLOXY)BENZAMIDE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    VG3
    Search 
    Download 
    VG3 C31 H45 N3 O5 S
    N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]- 3-(pentylsulfonyl)benzamide
    VG3:2VIY
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    VG3
    Search 
    Download 
    VG3
    IC50: 1800 nM (98) - data from BindingDB  
    IC50: 1800 nM - data from BindingMOAD  
    IC50: 1800 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
Downloadable viewers: