2VDY

CRYSTAL STRUCTURE OF THE REACTIVE LOOP CLEAVED CORTICOSTEROID BINDING GLOBULIN COMPLEXED WITH CORTISOL

Structural Biology Knowledgebase: 2VDY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VDY

Classification: TRANSPORT PROTEIN

Total Structure Weight: 84096.93

Macromolecule Entities
Molecule Chains Length Organism Details
CORTICOSTEROID-BINDING GLOBULIN A, B 373 Homo sapiens Fragment: RESIDUES 33-405
Mutation: N305T
Details: COMPLEXED WITH CORTISOL
Gene Name(s): SERPINA6 Gene View CBG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HCY
Query on HCY

A, B (11alpha,14beta)-11,17,21-trihydroxypregn- 4-ene-3,20-dione
CORTISOL (Synonym)
C21 H30 O5
JYGXADMDTFJGBT-VWUMJDOOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.210
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 38.67 α = 83.09
b = 39.76 β = 85.70
c = 111.59 γ = 69.42

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-13
  • Released Date: 2008-05-13
  • Deposition author(s): Zhou, A., Wei, Z., Read, R.J.

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor