RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE DOI:10.2210/pdb2vdk/pdb

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ENTRY 2VDK SUPERSEDES 1TY3 Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Cell Adhesion/immune System Structure Weight: 150495.93 Molecule: INTEGRIN ALPHA-IIB Polymer: 1 Type: protein Length: 452 Chains: A Fragment: HEADPIECE, RESIDUES 32-483 Organism Homo sapiens Gene Names ITGA2B GP2B ITGAB UniProtKB:   Protein Feature View | Search PDB | P08514     Molecule: INTEGRIN BETA-3 Polymer: 2 Type: protein Length: 461 Chains: B Fragment: HEADPIECE, RESIDUES 27-487 Organism Homo sapiens Gene Names ITGB3 GP3A UniProtKB:   Protein Feature View | Search PDB | P05106     Molecule: MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN Polymer: 3 Type: protein Length: 221 Chains: H Organism Mus musculus Molecule: MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN Polymer: 4 Type: protein Length: 214 Chains: L Organism Mus musculus     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 3 Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse   Polymer: 4 Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse   Polymer: 10 Scientific Name: Synthetic construct   Taxonomy     Polymer: 11 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1DPK  SOLUTION STRUCTURE OF THE CYTOPLASMIC DOMAIN OF THE INTEGRIN ALPHA-IIB SUBUNIT  1DPQ  SOLUTION STRUCTURE OF THE CONSTITUTIVELY ACTIVE MUTANT OF THE INTEGRIN ALPHA IIB CYTOPLASMIC DOMAIN.  1JV2  CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRINALPHAVBETA3  1JX5  THEORETICAL MODEL OF THE BETA-PROPELLER DOMAIN OF INTEGRINALPHAIIB  1KUP  SOLUTION STRUCTURE OF THE MEMBRANE PROXIMAL REGIONS OFALPHA-IIB AND BETA-3 INTEGRINS  1KUZ  SOLUTION STRUCTURE OF THE MEMBRANE PROXIMAL REGIONS OFALPHA-IIB AND BETA-3 INTEGRINS  1L5G  CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRINAVB3 IN COMPLEX WITH AN ARG- GLY-ASP LIGAND  1M1X  CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRINALPHA VBETA3 BOUND TO MN2+  1M8O  PLATELET INTEGRIN ALFAIIB-BETA3 CYTOPLASMIC DOMAIN  1MIZ  CRYSTAL STRUCTURE OF AN INTEGRIN BETA3-TALIN CHIMERA  1MK7  CRYSTAL STRUCTURE OF AN INTEGRIN BETA3-TALIN CHIMERA  1MK9  CRYSTAL STRUCTURE OF AN INTEGRIN BETA3-TALIN CHIMERA  1RN0  A REFINED THREE-DIMENSIONAL MODEL OF INTEGRIN AIIBB3  1S4W  NMR STRUCTURE OF THE CYTOPLASMIC DOMAIN OF INTEGRIN AIIB INDPC MICELLES  1S4X  NMR STRUCTURE OF THE INTEGRIN B3 CYTOPLASMIC DOMAIN IN DPCMICELLES  1TYE  STRUCTURAL BASIS FOR ALLOSTERY IN INTEGRINS AND BINDING OFLIGAND-MIMETIC THERAPEUTICS TO THE PLATELET RECEPTOR FORFIBRINOGEN  1U8C  A NOVEL ADAPTATION OF THE INTEGRIN PSI DOMAIN REVEALED FROMITS CRYSTAL STRUCTURE  1UV9  HOMOLOGY MODELING OF GPIIB  2VC2  RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO ANTAGONIST L-739758  2VDL  RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE  2VDM  RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO ANTAGONIST TIROFIBAN  2VDN  RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO ANTAGONIST EPTIFIBATIDE  2VDO  INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO FIBRINOGEN GAMMA CHAIN PEPTIDE, HHLGGAKQAGDV  2VDP  INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO FIBRINOGEN GAMMA CHAIN PEPTIDE,LGGAKQAGDV  2VDQ  INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO A CHIMERIC FIBRINOGEN GAMMA CHAIN PEPTIDE, HHLGGAKQRGDV  2VDR  INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO FIBRINOGEN GAMMA CHAIN CHIMERA PEPTIDE, LGGAKQRGDV      Ligand Chemical Component Hide Identifier Formula Name Interactions CA Search  Download  Ca CALCIUM ION   Ligand Explorer CAC Search  Download  C2 H6 As O2 CACODYLATE ION   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 5 Domains - data from CATH   Pfam Classification: 8 Domains - data from Pfam   GO Terms: 59 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Springer, T.A.,  Zhu, J.,  Xiao, T. Deposition:   2007-10-10 Release:   2008-09-02 Last Modified (REVDAT):   2011-07-13 Previous versions:  1TY3     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Refinement description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.80 R-Value: 0.164 (obs.) R-Free: 0.205 Space Group: P 32 2 1 Unit Cell:   Length [Å] Angles [°] a = 148.87 α = 90.00  b = 148.87 β = 90.00  c = 176.14 γ = 120.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin