2V4M

THE ISOMERASE DOMAIN OF HUMAN GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE 1 (GFPT1) IN COMPLEX WITH FRUCTOSE 6-PHOSPHATE

Structural Biology Knowledgebase: 2V4M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2V4M

Classification: TRANSFERASE

Total Structure Weight: 170582.25

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 1 A, B, C, D 376 Homo sapiens EC#: 2.6.1.16 IUBMB
Fragment: EACH SUBUNIT HAS TWO SIS DOMAINS, RESIDUES 332-699
Gene Name(s): GFPT1 Gene View GFAT GFPT

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F6R
Query on F6R

A, B, C, D FRUCTOSE -6-PHOSPHATE
C6 H13 O9 P
GSXOAOHZAIYLCY-HSUXUTPPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.167
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 178.82 α = 90.00
b = 178.82 β = 90.00
c = 157.11 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-26
  • Released Date: 2008-10-07
  • Deposition author(s): Moche, M., Lehtio, L., Andersson, J., Arrowsmith, C.H., Berglund, H., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, A., Johansson, I., Karlberg, T., Kotenyova, T., Nilsson, M.E., Nyman, T., Persson, C., Sagemark, J., Svensson, S., Schueler, H., Thorsell, A.G., Tresaugues, L., Uppenberg, J., Van Den Berg, S., Welin, M., Wisniewska, M., Weigelt, J., Nordlund, P., Wikstrom, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4