2UZ9

Human guanine deaminase (guaD) in complex with zinc and its product Xanthine.

Structural Biology Knowledgebase: 2UZ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2UZ9

Classification: HYDROLASE

Total Structure Weight: 53838.69

Macromolecule Entities
Molecule Chains Length Organism Details
GUANINE DEAMINASE A 476 Homo sapiens EC#: 3.5.4.3 IUBMB
Details: THE PROTEIN CHAIN CONTAINS A HEXAHISTIDINE TAIL IN THE N-TERMINUS
Gene Name(s): GDA Gene View KIAA1258

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XAN
Query on XAN

A XANTHINE
C5 H4 N4 O2
LRFVTYWOQMYALW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XAN Ki: 1960 nM (100) BindingDB

N/A in BindingMoad
Ki: 1960 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.169
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.74 α = 90.00
b = 85.71 β = 116.49
c = 78.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-26
  • Released Date: 2007-05-08
  • Deposition author(s): Moche, M., Welin, M., Arrowsmith, C., Berglund, H., Busam, R., Collins, R., Dahlgren, L.G., Edwards, A., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Hallberg, B.M., Holmberg-Schiavone, L., Johansson, I., Kallas, A., Karlberg, T., Kotenyova, T., Lehtio, L., Nyman, T., Ogg, D., Persson, C., Sagemark, J., Stenmark, P., Sundstrom, M., Thorsell, A.G., van den berg, S., Weigelt, J., Nordlund, P., Structural Genomics Consortium (SGC)

Revision History

No revisions since initial release