2UYY

STRUCTURE OF THE CYTOKINE-LIKE NUCLEAR FACTOR N-PAC

Structural Biology Knowledgebase: 2UYY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2UYY

Classification: CYTOKINE

Total Structure Weight: 137751.88

Macromolecule Entities
Molecule Chains Length Organism Details
N-PAC PROTEIN A, B, C, D 316 Homo sapiens EC#: 1 IUBMB
Fragment: RESIDUES 192-484
Gene Name(s): GLYR1 Gene View HIBDL NP60
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA7
Query on NA7

A, D [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)- 3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN- 2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN- 2-YL]METHYL DIHYDROGEN DIPHOSPHATE
C15 H24 N5 O16 P3
XDDBFIXGEVGCEU-AOOZFPJJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C, D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.170
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 134.18 α = 90.00
b = 134.18 β = 90.00
c = 261.46 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-20
  • Released Date: 2007-07-03
  • Deposition author(s): Tickle, J., Pilka, E.S., Bunkoczi, G., Berridge, G., Smee, C., Kavanagh, K.L., Hozjan, V., Niesen, F.H., Papagrigoriou, E., Pike, A.C.W., Turnbull, A., Arrowsmith, C.H., Edwards, A., Sundstrom, M., Weigelt, J., Von Delft, F., Oppermann, U.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4