Crystal structure of the NR3B ligand binding core complex with D-serine at 1.62 Angstrom resolution
2RCB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Membrane Protein
    Structure Weight: 64664.08
    Molecule: Glutamate [NMDA] receptor subunit 3B
    Polymer: 1 Type: protein Length: 292
    Chains: A, B
    Fragment: unp residues 413-560, 676-815
    Organism: Rattus norvegicus
    Gene Name: Grin3b
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  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Rat Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1PB8   NR1 complex with D-serine 
    2RC7   NR3A complex with glycine 
    2RC8   NR3A complex with D-serine 
    2RC9   NR3A complex with ACPC 
    2RCA   NR3B complex with glycine 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DSN
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    DSN C3 H7 N O3
    D-SERINE
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    DSN
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    DSN
    N/Ain BindingDB
    N/Ain BindingMoad
    Kd: 163 nM - data from PDBbind  
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Yao, Y.,  Mayer, M.L.

    Deposition:   2007-09-19
    Release:   2008-08-05
    Last Modified (REVDAT):   2011-07-13
     
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    2011-07-13
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.62
    R-Value: 0.195 (obs.)
    R-Free: 0.228
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 45.78 α = 90.00 
    b = 83.52 β = 90.00 
    c = 144.96 γ = 90.00