2R6F

Crystal Structure of Bacillus stearothermophilus UvrA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.253

Literature

Macromolecules
Sequence Display for 2R6F

Classification: HYDROLASE

Total Structure Weight: 219670.47

Macromolecule Entities
Molecule Chains Length Organism Details
Excinuclease ABC subunit A A, B 972 Geobacillus stearothermophilus Fragment: UvrA
Gene Name(s): uvrA GK3085
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ADP N/A in BindingDB
N/A in BindingMoad
Kd: 10 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.253
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 102.71 α = 90.00
b = 94.72 β = 108.80
c = 130.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-05
  • Released Date: 2008-01-08
  • Deposition author(s): Inuzuka, Y., Pakotiprapha, D., Bowman, B.R., Jeruzalmi, D., Verdine, G.L.

Revision History

  • Version 1_0: 2008-01-08

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description