2R3A

Methyltransferase domain of human suppressor of variegation 3-9 homolog 2

Structural Biology Knowledgebase: 2R3A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2R3A

Classification: TRANSFERASE

Total Structure Weight: 34745.85

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SUV39H2 A 300 Homo sapiens EC#: 2.1.1.43 IUBMB
Fragment: Methyltransferase domain: Residues 112-410
Gene Name(s): SUV39H2 Gene View KMT1B

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

A S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SER
Query on SER

A SERINE
C3 H7 N O3
MTCFGRXMJLQNBG-REOHCLBHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.177
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.75 α = 90.00
b = 63.92 β = 109.33
c = 64.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-08-29
  • Released Date: 2007-09-11
  • Deposition author(s): Lunin, V.V., Wu, H., Zeng, H., Ren, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Min, J., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4