Crystal structure of putative thioesterase (YP_613385.1) from Silicibacter sp. TM1040 at 2.15 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Phenylacetic acid degradation-related protein | 159 | Ruegeria sp. TM1040 | Mutation(s): 0  Gene Names: YP_613385.1, TM1040_1390 | ||
UniProt | |||||
Find proteins for Q1GGU3 (Ruegeria sp. (strain TM1040)) Explore Q1GGU3  Go to UniProtKB:  Q1GGU3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q1GGU3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | F [auth A] G [auth A] I [auth B] J [auth B] M [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | E [auth A], H [auth B], K [auth C], L [auth C], N [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 95.307 | α = 90 |
b = 95.307 | β = 90 |
c = 132.634 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PHENIX | refinement |
SHELX | phasing |
MolProbity | model building |
SCALA | data scaling |
PDB_EXTRACT | data extraction |
MAR345 | data collection |
MOSFLM | data reduction |
autoSHARP | phasing |