Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 50S subunit of the first 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.     DOI:10.2210/pdb2qba/pdb   NDB ID: RR0174

2QBA Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly 1 (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 2QB9   2QBA   2QBB   2QBC   Download All Files          Primary Citation       Molecular Description Hide Classification: Ribosome Structure Weight: 1359176.50   Molecule: 5S rRNA Polymer: 1 Type: polyribonucleotide Length: 120 Chains: A Molecule: 23S rRNA Polymer: 2 Type: polyribonucleotide Length: 2904 Chains: B Molecule: 50S ribosomal protein L11 Polymer: 3 Type: polypeptide(L) Length: 141 Chains: I Molecule: 50S ribosomal protein L2 Polymer: 4 Type: polypeptide(L) Length: 272 Chains: C Molecule: 50S ribosomal protein L3 Polymer: 5 Type: polypeptide(L) Length: 209 Chains: D Molecule: 50S ribosomal protein L14 Polymer: 6 Type: polypeptide(L) Length: 123 Chains: K Molecule: 50S ribosomal protein L19 Polymer: 7 Type: polypeptide(L) Length: 114 Chains: P Molecule: 50S ribosomal protein L4 Polymer: 8 Type: polypeptide(L) Length: 201 Chains: E Molecule: 50S ribosomal protein L30 Polymer: 9 Type: polypeptide(L) Length: 58 Chains: Y Molecule: 50S ribosomal protein L32 Polymer: 10 Type: polypeptide(L) Length: 56 Chains: 0 Molecule: 50S ribosomal protein L36 Polymer: 11 Type: polypeptide(L) Length: 38 Chains: 4 Molecule: 50S ribosomal protein L33 Polymer: 12 Type: polypeptide(L) Length: 54 Chains: 1 Molecule: 50S ribosomal protein L35 Polymer: 13 Type: polypeptide(L) Length: 64 Chains: 3 Molecule: 50S ribosomal protein L25 Polymer: 14 Type: polypeptide(L) Length: 94 Chains: V Molecule: 50S ribosomal protein L34 Polymer: 15 Type: polypeptide(L) Length: 46 Chains: 2 Molecule: 50S ribosomal protein L15 Polymer: 16 Type: polypeptide(L) Length: 144 Chains: L Molecule: 50S ribosomal protein L16 Polymer: 17 Type: polypeptide(L) Length: 136 Chains: M Molecule: 50S ribosomal protein L29 Polymer: 18 Type: polypeptide(L) Length: 63 Chains: X Molecule: 50S ribosomal protein L9 Polymer: 19 Type: polypeptide(L) Length: 149 Chains: H Molecule: 50S ribosomal protein L13 Polymer: 20 Type: polypeptide(L) Length: 142 Chains: J Molecule: 50S ribosomal protein L17 Polymer: 21 Type: polypeptide(L) Length: 127 Chains: N Molecule: 50S ribosomal protein L18 Polymer: 22 Type: polypeptide(L) Length: 117 Chains: O Molecule: 50S ribosomal protein L20 Polymer: 23 Type: polypeptide(L) Length: 117 Chains: Q Molecule: 50S ribosomal protein L22 Polymer: 24 Type: polypeptide(L) Length: 110 Chains: S Molecule: 50S ribosomal protein L24 Polymer: 25 Type: polypeptide(L) Length: 103 Chains: U Molecule: 50S ribosomal protein L5 Polymer: 26 Type: polypeptide(L) Length: 178 Chains: F Molecule: 50S ribosomal protein L6 Polymer: 27 Type: polypeptide(L) Length: 176 Chains: G Molecule: 50S ribosomal protein L21 Polymer: 28 Type: polypeptide(L) Length: 103 Chains: R Molecule: 50S ribosomal protein L23 Polymer: 29 Type: polypeptide(L) Length: 100 Chains: T Molecule: 50S ribosomal protein L28 Polymer: 30 Type: polypeptide(L) Length: 78 Chains: Z Molecule: 50S ribosomal protein L27 Polymer: 31 Type: polypeptide(L) Length: 84 Chains: W       Source Hide Polymer: 1 Scientific Name: Escherichia coli   Polymer: 2 Scientific Name: Escherichia coli   Polymer: 3 Scientific Name: Escherichia coli   Polymer: 4 Scientific Name: Escherichia coli   Polymer: 5 Scientific Name: Escherichia coli   Polymer: 6 Scientific Name: Escherichia coli   Polymer: 7 Scientific Name: Escherichia coli   Polymer: 8 Scientific Name: Escherichia coli   Polymer: 9 Scientific Name: Escherichia coli   Polymer: 10 Scientific Name: Escherichia coli   Polymer: 11 Scientific Name: Escherichia coli   Polymer: 12 Scientific Name: Escherichia coli   Polymer: 13 Scientific Name: Escherichia coli   Polymer: 14 Scientific Name: Escherichia coli   Polymer: 15 Scientific Name: Escherichia coli   Polymer: 16 Scientific Name: Escherichia coli   Polymer: 17 Scientific Name: Escherichia coli   Polymer: 18 Scientific Name: Escherichia coli   Polymer: 19 Scientific Name: Escherichia coli   Polymer: 20 Scientific Name: Escherichia coli   Polymer: 21 Scientific Name: Escherichia coli   Polymer: 22 Scientific Name: Escherichia coli   Polymer: 23 Scientific Name: Escherichia coli   Polymer: 24 Scientific Name: Escherichia coli   Polymer: 25 Scientific Name: Escherichia coli   Polymer: 26 Scientific Name: Escherichia coli   Polymer: 27 Scientific Name: Escherichia coli   Polymer: 28 Scientific Name: Escherichia coli   Polymer: 29 Scientific Name: Escherichia coli   Polymer: 30 Scientific Name: Escherichia coli   Polymer: 31 Scientific Name: Escherichia coli         Related PDB Entries Hide Id Details 2QB9  30s subunit of 70s ribosome one  2QBB  30s subunit of 70s ribosome two  2QBC  50s subunit of 70s ribosome two        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links LLL     (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO- 3-((2R,3R,6S)-3-AMINO-6- (AMINOMETHYL)-TETRAHYDRO- 2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)- 5-METHYL-4- (METHYLAMINO)-TETRAHYDRO-2H-PYRAN- 3,5-DIOL C19 H39 N5 O7 Ligand Explorer MG     MAGNESIUM ION Mg Ligand Explorer ZN     ZINC ION Zn Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (32 Domains) CATH Classification v3.2.0 - (6 Domains) PFAM Classification - (32 Domains) GO Terms - (228 Terms)     Reset Layout

Biological Assembly 1     More Images... View in Jmol Composite of PDB entries (2QB9 and 2QBA)         Deposition Summary Hide Authors:   Borovinskaya, M.A.,   Pai, R.D.,   Zhang, W.,   Schuwirth, B.-S.,   Holton, J.M.,   Hirokawa, G.,   Kaji, H.,   Kaji, A.,   Cate, J.H.D. Deposition:   2007-06-16 Release:   2007-09-25 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 3.54 R-Value: 0.281 (work) R-Free: 0.320 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 208.85 α = 90.00  b = 379.20 β = 90.00  c = 739.28 γ = 90.00