LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA DOI:10.2210/pdb2prg/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Complex (thiazolidinedione/receptor) Structure Weight: 72105.75 Molecule: PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA Polymer: 1 Type: protein Length: 271 Chains: A, B Fragment: LBD (LIGAND BINDING DOMAIN), RESIDUES 207-477 Organism Homo sapiens Gene Names PPARG NR1C3 UniProtKB:   Protein Feature View | Search PDB | P37231     Molecule: NUCLEAR RECEPTOR COACTIVATOR SRC-1 Polymer: 2 Type: protein Length: 88 Chains: C EC#: 2.3.1.48    Fragment: FRAGMENT CONTAINING HD1 & HD2 RESIDUES 628-703 Details: COMPLEX WITH ROSIGLITAZONE (BRL-49653) REGISTRY # 122320-73-4 Organism Homo sapiens Gene Names NCOA1 BHLHE74 SRC1 UniProtKB:   Protein Feature View | Search PDB | Q15788         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)       Ligand Chemical Component Hide Identifier Formula Name Interactions BRL Search  Download  C18 H19 N3 O3 S 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) BRL Search  Download  EC50: 2.4 - 2880 nM (98 - 100) - data from BindingDB   IC50: 30 - 50000 nM (100) - data from BindingDB   Kd: 4980 nM (100) - data from BindingDB   Ki: 8 - 440 nM (100) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Nolte, R.T.,  Wisely, G.B.,  Milburn, M.V. Deposition:   1998-08-14 Release:   1999-07-19 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.30 R-Value: 0.207 (obs.) R-Free: 0.264 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 52.21 α = 90.00  b = 69.06 β = 90.00  c = 177.97 γ = 90.00