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LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
2PRG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Complex (thiazolidinedione/receptor)
    Structure Weight: 72105.75
    Molecule: PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
    Polymer: 1 Type: protein Length: 271
    Chains: A, B
    Fragment: LBD (LIGAND BINDING DOMAIN), RESIDUES 207-477
    Organism Homo sapiens
    Gene Names PPARG NR1C3
    UniProtKB:   Protein Feature View | Search PDB | P37231  
    Molecule: NUCLEAR RECEPTOR COACTIVATOR SRC-1
    Polymer: 2 Type: protein Length: 88
    Chains: C
    EC#: 2.3.1.48   
    Fragment: FRAGMENT CONTAINING HD1 & HD2 RESIDUES 628-703
    Details: COMPLEX WITH ROSIGLITAZONE (BRL-49653) REGISTRY # 122320-73-4
    Organism Homo sapiens
    Gene Names NCOA1 BHLHE74 SRC1
    UniProtKB:   Protein Feature View | Search PDB | Q15788  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BRL
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    BRL C18 H19 N3 O3 S
    2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)
    BRL:2PRG
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    BRL
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    BRL
    EC50: 2.4 - 2880 nM (98 - 100) - data from BindingDB  
    IC50: 30 - 450 nM (100) - data from BindingDB  
    Kd: 7 - 4980 nM (100) - data from BindingDB  
    Ki: 8 - 440 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Nolte, R.T.,  Wisely, G.B.,  Milburn, M.V.

    Deposition:   1998-08-14
    Release:   1999-07-19
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.30
    R-Value: 0.207 (obs.)
    R-Free: 0.264
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 52.21 α = 90.00 
    b = 69.06 β = 90.00 
    c = 177.97 γ = 90.00