2PA5

Crystal structure of human protein tyrosine phosphatase PTPN9


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 2PA5

Classification: HYDROLASE

Total Structure Weight: 72968.34

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase non-receptor type 9 A, B 314 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: PTPN9: Tyrosine-protein phosphatase domain
Gene Name(s): PTPN9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.156
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 39.97 α = 77.44
b = 57.43 β = 78.22
c = 66.45 γ = 80.41

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-27
  • Released Date: 2007-05-15
  • Deposition author(s): Ugochukwu, E., Barr, A., Pike, A.C.W., Savitsky, P., Papagrigoriou, E., Turnbull, A., Uppenberg, J., Bunkoczi, G., Salah, E., Das, S., von Delft, F., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A., Knapp, S., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2007-05-15

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description