2P31

Crystal structure of human glutathione peroxidase 7

Structural Biology Knowledgebase: 2P31 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.163

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2P31

Classification: OXIDOREDUCTASE

Total Structure Weight: 41269.38

Macromolecule Entities
Molecule Chains Length Organism Details
Glutathione peroxidase 7 A, B 181 Homo sapiens EC#: 1.11.1.9 IUBMB
Gene Name(s): GPX7 Gene View GPX6 Gene View UNQ469/PRO828

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.163
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 32.05 α = 90.00
b = 56.22 β = 91.27
c = 94.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-08
  • Released Date: 2007-03-20
  • Deposition author(s): Kavanagh, K.L., Johansson, C., Papagrigoriou, E., Kochan, G., Umeano, C., Gileadi, O., von Delft, F., Weigelt, J., Arrowsmith, C.H., Sundstrom, M., Edwards, A., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor