RCSB Protein Data Bank - RCSB PDB - 2P1D Structure Summary

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Crystal structure of dengue methyltransferase in complex with GTP and S-Adenosyl-L-homocysteine

DOI:10.2210/pdb2p1d/pdb

2P1D

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Viral Protein , Transferase
Structure Weight:	36105.51

Molecule:

type II methyltransferase

Polymer:

Type:

protein

Length:

305

Chains:

EC#:

Fragment:

residues 1-296

Organism

Dengue virus 2

UniProtKB:

| | P12823

Source

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Polymer: 1

Scientific Name:

Dengue virus 2

Taxonomy

Expression System:

Escherichia coli

Related PDB Entries Hide

Identifier Details

1L9K

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
5GP Search Download	C₁₀ H₁₄ N₅ O₈ P	GUANOSINE-5'-MONOPHOSPHATE		Ligand Explorer
SAH Search Download	C₁₄ H₂₀ N₆ O₅ S	S-ADENOSYL-L-HOMOCYSTEINE		Ligand Explorer
SO4 Search Download	O₄ S	SULFATE ION		Ligand Explorer

External Domain Annotations Hide
SCOP Classification v1.75: 1 Domain - data from SCOP

CATH Classification v3.4.0: 1 Domain - data from CATH

Pfam Classification: 2 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 assigned by authors and generated by PQS (software)

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Deposition Summary

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Authors: Egloff, M.P., Benarooch, D., Marseilles Structural Genomics Program @ AFMB

Deposition:	2007-03-05
Release:	2007-03-20
Last Modified (REVDAT):	2011-07-13

Revision History Hide

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2011-07-13
Version format compliance

2011-07-13
Biological assembly

Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 112.20	α = 90.00
	b = 112.20	β = 90.00
	c = 56.46	γ = 120.00

Molecule of the Month Hide
Dengue Virus