2P0E

Human nicotinamide riboside kinase 1 in complex with tiazofurin

Structural Biology Knowledgebase: 2P0E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2P0E

Classification: TRANSFERASE

Total Structure Weight: 24764.29

Macromolecule Entities
Molecule Chains Length Organism Details
Nicotinamide riboside kinase 1 A 207 Homo sapiens EC#: 2.7.1.22 IUBMB
Mutation: M62M, M65M, M66M, M73M, M149M, M157M
Gene Name(s): NMRK1 Gene View C9orf95 NRK1

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TIZ
Query on TIZ

A (1R)-1-[4-(AMINOCARBONYL)-1,3-THIAZOL-2-YL]- 1,4-ANHYDRO-D-RIBITOL
TIAZOFURIN (Synonym)
C9 H12 N2 O5 S
FVRDYQYEVDDKCR-DBRKOABJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.175
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 55.61 α = 90.00
b = 141.57 β = 90.00
c = 62.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-28
  • Released Date: 2007-05-08
  • Deposition author(s): Rabeh, W.M., Tempel, W., Nedyalkova, L., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Brenner, C., Park, H., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4