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Crystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analog
DOI:10.2210/pdb2ozm/pdb   NDB ID: PD0981
2OZM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 114871.86
    Molecule: Template DNA
    Polymer: 1 Type: dna Length: 18
    Chains: T
    Molecule: Primer DNA
    Polymer: 2 Type: dna Length: 14
    Chains: P
    Molecule: DNA polymerase
    Polymer: 3 Type: protein Length: 903
    Chains: A
    EC#: 2.7.7.7   
    Mutation: D222A,D327A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1IG9   
    1RV2   
    2OYQ   
    2OZS   
    2P5G   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    N5P
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    N5P C13 H17 N2 O14 P3
    1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]- BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H- INDOLE
    N5P:2OZM
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
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    3DR C5 H11 O6 P dnaLinking
    DDG
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    DDG C10 H14 N5 O6 P DG dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0981
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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