2OXQ

Structure of the UbcH5 :CHIP U-box complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 2OXQ

Classification: LIGASE

Total Structure Weight: 52338.13

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2D 1 A, B 152 Danio rerio EC#: 6.3.2.19 IUBMB
Fragment: UbcH5
Gene Name(s): ube2d1b ube2d1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
STIP1 homology and U-Box containing protein 1 C, D 80 Danio rerio Fragment: U-box domain
Gene Name(s): stub1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.240
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 79.04 α = 90.00
b = 93.40 β = 90.00
c = 144.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-20
  • Released Date: 2008-02-19
  • Deposition author(s): Xu, Z., Nix, J.C., Devlin, K.I., Misra, S.

Revision History

  • Version 1_0: 2008-02-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance