POP-OUT | CLOSE
Crystal structure of JMJD2A complexed with histone H3 peptide monomethylated at Lys9
2OT7
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 90917.70
    Molecule: JmjC domain-containing histone demethylation protein 3A
    Polymer: 1 Type: protein Length: 381
    Chains: A, B
    EC#: 1.14.11   
    Organism Homo sapiens
    Gene Names KDM4A JHDM3A JMJD2 JMJD2A KIAA0677
    UniProtKB:   Protein Feature View | Search PDB | O75164  
    Molecule: histone 3 K9 monomethyl
    Polymer: 2 Type: protein Length: 8
    Chains: C, D
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2OQ6  Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys9 
    2OQ7  Crystal structure of JMJD2A complexed with Ni and N-oxalylglycine 
    2OS2  Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys36 
    2OX0  Crystal structure of JMJD2A complexed with histone H3 peptide dimethylated at Lys9 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    NI
    Search 
    Download      		NI Ni
    NICKEL (II) ION
    OGA
    Search 
    Download      		OGA C4 H5 N O5
    N-OXALYLGLYCINE
    		OGA:2OT7
    ZN
    Search 
    Download      		ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    OGA
    Search 
    Download      		OGA
    IC50: 250000 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MLZ
    Search      		MLZ C7 H16 N2 O2 LYS lPeptideLinking
    ALY
    Search      		ALY C8 H16 N2 O3 LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
Reset Layout
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
Downloadable viewers: