2O6V

Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 2O6V

Classification: SIGNALING PROTEIN

Total Structure Weight: 69591.52

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin A, C, E, G 76 Homo sapiens Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin B, F 76 Homo sapiens Mutation: K148X, K163R
Gene Name(s): UBC Gene View
Ubiquitin D, H 76 Homo sapiens Mutation: K348R, K363R
Gene Name(s): UBC Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

B, D 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, D, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SLZ
Query on SLZ
B, F L-PEPTIDE LINKING C5 H12 N2 O2 S LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.222
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 59.10 α = 90.00
b = 77.08 β = 90.32
c = 139.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-08
  • Released Date: 2007-02-13
  • Deposition author(s): Eddins, M.J., Wolberger, C.

Revision History

  • Version 1_0: 2007-02-13

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2012-06-27

    Type: Structure summary