Download MendeleyChemical parameters influencing fine tuning in the binding of Macrolide antibiotics to the ribosomal tunnel
Pyetan, E., Baram, D., Auerbach-Nevo, T., Yonath, A.To be published.
2O43
Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamine
- PDB DOI: https://doi.org/10.2210/pdb2O43/pdb
- NAKB: 2O43
- Classification: RNA
- Organism(s): Deinococcus radiodurans
- Mutation(s): No
- Deposited: 2006-12-03 Released: 2007-12-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.60 Å
- R-Value Free: 0.341
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 23S rRNA | 2,880 | Deinococcus radiodurans |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ERN Query on ERN | B [auth A] | (3R,4S,5S,6R,7R,9R,10S,11S,12R,13S,14R)-10-AMINO-6-{[(2S,3R,4S,6R)-4-(DIMETHYLAMINO)-3-HYDROXY-6-METHYLTETRAHYDRO-2H-PY
RAN-2-YL]OXY}-14-ETHYL-7,12,13-TRIHYDROXY-4-{[(2R,4R,5S,6S)-5-HYDROXY-4-METHOXY-4,6-DIMETHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY
}-3,5,7,9,11,13-HEXAMETHYLOXACYCLOTETRADECAN-2-ONE C37 H70 N2 O12 XCLJRCAJSCMIND-JCTYMORFSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.60 Å
- R-Value Free: 0.341
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 170.437 | α = 90 |
| b = 413.538 | β = 90 |
| c = 693.72 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2007-12-04 Deposition Author(s): Pyetan, E., Baram, D., Auerbach-Nevo, T., Yonath, A.
Revision History (Full details and data files)
- Version 1.0: 2007-12-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-12-28
Changes: Advisory - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
